Make plot as specified in settings — makePlots • pandemonium

Used as interface to generate a specific graph seen when using the GUI. Settings include: coord, useCov, metric, linkage, k, plotType

makePlots(
  pred,
  covInv,
  wc,
  exp,
  settings,
  user_coord = NULL,
  user_dist = NULL,
  c = NULL
)

Arguments

pred	prediction matrix
covInv	inverse covariance matrix
wc	matrix specifying the model parameters (on a grid)
exp	observable reference value (e.g. experimental measurement)
settings	list specifying parameters usually selected in the app
user_coord	input coordinate matrix (optional)
user_dist	input distance matrix (optional)
c	specification for conditioning

ggplot